Pseudomonas aeruginosa UCBPP-PA14, PA14_07560 (rpsU)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01165
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01165
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01165
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.20.5.1150 Ribosomal protein S8 IPR038380 Small ribosomal subunit protein bS21 superfamily 16 54 2.2E-18
PRINTS PR00976 Ribosomal protein S21 family signature IPR001911 Small ribosomal subunit protein bS21 13 22 1.1E-16
Pfam PF01165 Ribosomal protein S21 IPR001911 Small ribosomal subunit protein bS21 4 56 2.0E-22
PANTHER PTHR21109 MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 IPR001911 Small ribosomal subunit protein bS21 4 62 1.3E-14
NCBIfam TIGR00030 JCVI: 30S ribosomal protein S21 IPR001911 Small ribosomal subunit protein bS21 2 59 9.1E-25
PRINTS PR00976 Ribosomal protein S21 family signature IPR001911 Small ribosomal subunit protein bS21 5 13 1.1E-16
Hamap MF_00358 30S ribosomal protein S21 [rpsU]. IPR001911 Small ribosomal subunit protein bS21 1 57 21.389309
PRINTS PR00976 Ribosomal protein S21 family signature IPR001911 Small ribosomal subunit protein bS21 37 47 1.1E-16
Coils Coil Coil - - 43 71 -
PRINTS PR00976 Ribosomal protein S21 family signature IPR001911 Small ribosomal subunit protein bS21 25 35 1.1E-16
MobiDBLite mobidb-lite consensus disorder prediction - - 49 63 -
MobiDBLite mobidb-lite consensus disorder prediction - - 48 71 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.