Pseudomonas aeruginosa UCBPP-PA14, PA14_07960 (prtR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.260.40
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR40661 | - | - | - | 9 | 247 | 2.7E-69 |
| SUPERFAMILY | SSF47413 | lambda repressor-like DNA-binding domains | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 10 | 74 | 8.19E-13 |
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 13 | 69 | 2.76482E-12 |
| Gene3D | G3DSA:2.10.109.10 | Umud Fragment, subunit A | - | - | 111 | 246 | 4.0E-18 |
| Pfam | PF01381 | Helix-turn-helix | IPR001387 | Cro/C1-type helix-turn-helix domain | 16 | 69 | 3.4E-11 |
| CDD | cd06529 | S24_LexA-like | IPR039418 | LexA-like | 154 | 230 | 1.01637E-20 |
| SMART | SM00530 | mbf_short4 | IPR001387 | Cro/C1-type helix-turn-helix domain | 15 | 69 | 2.0E-14 |
| SUPERFAMILY | SSF51306 | LexA/Signal peptidase | IPR036286 | LexA/Signal peptidase-like superfamily | 109 | 243 | 2.09E-21 |
| Gene3D | G3DSA:1.10.260.40 | - | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 10 | 78 | 3.2E-22 |
| Pfam | PF00717 | Peptidase S24-like | IPR015927 | Peptidase S24/S26A/S26B/S26C | 112 | 241 | 3.4E-24 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.