Pseudomonas aeruginosa UCBPP-PA14, PA14_08370 (vfr)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13545	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF13545	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pau02024	Quorum sensing	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pau02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pau02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF51206	cAMP-binding domain-like	IPR018490	Cyclic nucleotide-binding domain superfamily	12	141	1.22E-34
PRINTS	PR00034	CRP bacterial regulatory protein HTH signature	IPR012318	Crp-type HTH domain	170	186	3.3E-9
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	IPR014710	RmlC-like jelly roll fold	11	142	3.2E-37
FunFam	G3DSA:2.60.120.10:FF:000001	cAMP-activated global transcriptional regulator CRP	-	-	3	136	8.2E-62
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	143	211	1.9E-39
Pfam	PF13545	Crp-like helix-turn-helix domain	IPR012318	Crp-type HTH domain	146	209	1.5E-12
SMART	SM00419	crpmeuga4	IPR012318	Crp-type HTH domain	164	212	6.6E-15
Pfam	PF00027	Cyclic nucleotide-binding domain	IPR000595	Cyclic nucleotide-binding domain	22	114	1.3E-22
SMART	SM00100	cnmp_10	IPR000595	Cyclic nucleotide-binding domain	3	126	2.5E-27
CDD	cd00092	HTH_CRP	-	-	144	206	1.43828E-12
PRINTS	PR00034	CRP bacterial regulatory protein HTH signature	IPR012318	Crp-type HTH domain	186	201	3.3E-9
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	IPR036390	Winged helix DNA-binding domain superfamily	143	211	6.0E-16
PANTHER	PTHR24567	CRP FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN	-	-	10	205	2.4E-30
FunFam	G3DSA:1.10.10.10:FF:000006	cAMP-activated global transcriptional regulator CRP	-	-	143	211	1.6E-41
CDD	cd00038	CAP_ED	IPR000595	Cyclic nucleotide-binding domain	13	121	4.21591E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.