Pseudomonas aeruginosa UCBPP-PA14, PA14_08390 (speD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0008295 spermidine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33866
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004014 adenosylmethionine decarboxylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR33866
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Central intermediary metabolism Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00330 Arginine and proline metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00270 Cysteine and methionine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03331 JCVI: adenosylmethionine decarboxylase IPR009165 S-adenosylmethionine decarboxylase, bacterial 4 262 0.0
PIRSF PIRSF001356 SAM_decarboxylas IPR009165 S-adenosylmethionine decarboxylase, bacterial 1 264 0.0
Pfam PF02675 S-adenosylmethionine decarboxylase IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic 39 170 1.1E-30
FunFam G3DSA:3.60.90.10:FF:000001 S-adenosylmethionine decarboxylase proenzyme - - 33 186 3.7E-84
Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. IPR009165 S-adenosylmethionine decarboxylase, bacterial 1 264 168.55899
PANTHER PTHR33866 S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic 1 195 5.1E-55
Gene3D G3DSA:3.60.90.10 - - - 33 185 4.5E-26
SUPERFAMILY SSF56276 S-adenosylmethionine decarboxylase IPR016067 S-adenosylmethionine decarboxylase, core 44 174 4.71E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.