Pseudomonas aeruginosa UCBPP-PA14, PA14_45310 (ccmF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0071978 bacterial-type flagellum-dependent swarming motility
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1480
ECO:0000249
sequence similarity evidence used in automatic assertion
16824107
Biological Process GO:0002049 pyoverdine biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1480
ECO:0000249
sequence similarity evidence used in automatic assertion
16824107
Biological Process GO:0043107 type IV pilus-dependent motility
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1480
ECO:0000249
sequence similarity evidence used in automatic assertion
16824107
Molecular Function GO:0004096 catalase activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1480
ECO:0000249
sequence similarity evidence used in automatic assertion
16824107
Biological Process GO:0071977 bacterial-type flagellum-dependent swimming motility
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1480
ECO:0000249
sequence similarity evidence used in automatic assertion
16824107
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01578
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0017004 cytochrome complex assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43653
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015886 heme transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43653
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43653
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015232 heme transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43653
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01410 Cytochrome c-type biogenesis protein signature IPR003567 Cytochrome c-type biogenesis protein 160 182 2.6E-97
Pfam PF01578 Cytochrome C assembly protein IPR002541 Cytochrome c assembly protein 89 296 7.8E-56
PRINTS PR01410 Cytochrome c-type biogenesis protein signature IPR003567 Cytochrome c-type biogenesis protein 211 237 2.6E-97
PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature IPR003568 Cytochrome c-type biogenesis protein CcmF 352 369 3.8E-65
PRINTS PR01410 Cytochrome c-type biogenesis protein signature IPR003567 Cytochrome c-type biogenesis protein 80 106 2.6E-97
PRINTS PR01410 Cytochrome c-type biogenesis protein signature IPR003567 Cytochrome c-type biogenesis protein 295 311 2.6E-97
PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature IPR003568 Cytochrome c-type biogenesis protein CcmF 314 329 3.8E-65
PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature IPR003568 Cytochrome c-type biogenesis protein CcmF 629 642 3.8E-65
PANTHER PTHR43653 CYTOCHROME C ASSEMBLY PROTEIN-RELATED IPR003567 Cytochrome c-type biogenesis protein 206 573 0.0
PRINTS PR01410 Cytochrome c-type biogenesis protein signature IPR003567 Cytochrome c-type biogenesis protein 245 265 2.6E-97
PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature IPR003568 Cytochrome c-type biogenesis protein CcmF 190 205 3.8E-65
PRINTS PR01410 Cytochrome c-type biogenesis protein signature IPR003567 Cytochrome c-type biogenesis protein 311 330 2.6E-97
PRINTS PR01410 Cytochrome c-type biogenesis protein signature IPR003567 Cytochrome c-type biogenesis protein 132 149 2.6E-97
PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature IPR003568 Cytochrome c-type biogenesis protein CcmF 395 414 3.8E-65
PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature IPR003568 Cytochrome c-type biogenesis protein CcmF 113 136 3.8E-65
PRINTS PR01410 Cytochrome c-type biogenesis protein signature IPR003567 Cytochrome c-type biogenesis protein 275 295 2.6E-97
Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal 316 636 8.2E-127
NCBIfam TIGR00353 JCVI: heme lyase CcmF/NrfE family subunit IPR003568 Cytochrome c-type biogenesis protein CcmF 53 639 0.0
PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature IPR003568 Cytochrome c-type biogenesis protein CcmF 4 28 3.8E-65

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.