Pseudomonas aeruginosa UCBPP-PA14, PA14_45630 (fliA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:2000147 positive regulation of cell motility
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1455
ECO:0000249
sequence similarity evidence used in automatic assertion
1560774
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02479
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02479
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02937
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02479
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 226 237 2.3E-11
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 163 244 1.44E-20
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 194 206 2.3E-11
Gene3D G3DSA:1.20.140.160 - - - 93 243 1.0E-43
Gene3D G3DSA:1.10.1740.10 - - - 6 91 5.8E-26
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 19 241 1.3E-33
PIRSF PIRSF000770 SigK_SigE IPR000943 RNA polymerase sigma-70 1 246 8.5E-36
Pfam PF04539 Sigma-70 region 3 IPR007624 RNA polymerase sigma-70 region 3 103 166 3.1E-9
FunFam G3DSA:1.20.140.160:FF:000001 RNA polymerase sigma factor FliA - - 93 243 2.5E-71
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 49 62 2.3E-11
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 190 239 5.8E-19
PANTHER PTHR30385 SIGMA FACTOR F FLAGELLAR - - 14 245 5.1E-50
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 96 163 9.59E-13
CDD cd06171 Sigma70_r4 - - 184 238 3.54711E-13
NCBIfam TIGR02479 JCVI: FliA/WhiG family RNA polymerase sigma factor IPR012845 RNA polymerase sigma factor, FliA/WhiG 22 241 5.2E-82
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 22 94 5.0E-20
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 10 94 4.97E-26
FunFam G3DSA:1.10.1740.10:FF:000002 RNA polymerase sigma factor FliA - - 7 91 1.1E-40
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 211 226 2.3E-11
Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. IPR028617 RNA polymerase sigma factor FliA 8 244 68.11409

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.