Pseudomonas aeruginosa UCBPP-PA14, PA14_46030

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Chemotaxis Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF08447 PAS fold IPR013655 PAS fold-3 142 227 5.6E-15
SMART SM00086 pac_2 IPR001610 PAC motif 192 234 2.3E-6
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 129 231 5.76E-25
SMART SM00091 pas_2 IPR000014 PAS domain 3 65 2.8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 7 109 3.01E-26
FunFam G3DSA:3.30.450.20:FF:000103 Methyl-accepting chemotaxis protein - - 1 111 3.7E-52
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 303 330 6.0E-19
Gene3D G3DSA:1.10.287.950 - - - 228 415 4.0E-52
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 242 411 2.5E-57
SMART SM00086 pac_2 IPR001610 PAC motif 70 112 0.049
CDD cd11386 MCP_signal - - 242 414 3.88269E-54
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 8 118 2.4E-15
Gene3D G3DSA:3.30.450.20 PAS domain - - 105 227 1.9E-21
FunFam G3DSA:3.30.450.20:FF:000103 Methyl-accepting chemotaxis protein - - 119 233 2.3E-59
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 332 361 6.0E-19
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 129 237 1.0E-14
CDD cd00130 PAS IPR000014 PAS domain 129 231 6.46547E-12
SMART SM00091 pas_2 IPR000014 PAS domain 117 186 9.5
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 227 412 9.55E-57
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 223 417 1.7E-24
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 252 413 3.2E-41
Gene3D G3DSA:3.30.450.20 PAS domain - - 1 104 4.8E-23
CDD cd00130 PAS IPR000014 PAS domain 14 109 9.46762E-13
Pfam PF13426 PAS domain IPR000014 PAS domain 14 109 6.9E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.