Pseudomonas aeruginosa UCBPP-PA14, PA14_46030

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Chemotaxis Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 191 243 12.209
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 303 330 6.0E-19
SMART SM00283 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 223 417 1.7E-24
CDD cd11386 MCP_signal 242 414 3.2045E-54
CDD cd00130 PAS IPR000014 PAS domain 129 231 5.33614E-12
SMART SM00091 IPR000014 PAS domain 3 65 2.8
Pfam PF08447 PAS fold IPR013655 PAS fold-3 142 227 5.2E-15
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 7 109 3.01E-26
Gene3D G3DSA:3.30.450.20 1 104 1.6E-22
ProSiteProfiles PS50111 Bacterial chemotaxis sensory transducers domain profile. IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 242 417 37.028
SMART SM00086 IPR001610 PAC motif 192 234 2.3E-6
CDD cd00130 PAS IPR000014 PAS domain 14 109 7.8139E-13
SUPERFAMILY SSF58104 227 412 9.55E-57
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 332 361 6.0E-19
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 14 40 11.713
Gene3D G3DSA:1.10.287.950 226 415 1.5E-53
ProSiteProfiles PS50113 PAC domain profile. IPR000700 PAS-associated, C-terminal 67 121 10.428
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 252 413 3.0E-41
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 129 237 2.9E-15
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 8 118 7.1E-16
SMART SM00086 IPR001610 PAC motif 70 112 0.049
SMART SM00091 IPR000014 PAS domain 117 186 9.5
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 129 231 5.76E-25
Pfam PF13426 PAS domain IPR000014 PAS domain 14 109 8.9E-16
Gene3D G3DSA:3.30.450.20 105 225 1.2E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.