Pseudomonas aeruginosa UCBPP-PA14, PA14_47460 (rnd)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00474
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0033890 ribonuclease D activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008408 3'-5' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01388
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47819
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00474 35exoneu6 IPR002562 3'-5' exonuclease domain 6 174 1.8E-35
Pfam PF01612 3'-5' exonuclease IPR002562 3'-5' exonuclease domain 6 172 9.5E-39
CDD cd06142 RNaseD_exo - - 14 190 1.23929E-73
Pfam PF00570 HRDC domain IPR002121 HRDC domain 215 282 2.1E-17
SUPERFAMILY SSF47819 HRDC-like IPR010997 HRDC-like superfamily 197 303 2.62E-29
Hamap MF_01899 Ribonuclease D [rnd]. IPR006292 Ribonuclease D 6 372 43.372982
SMART SM00341 hrdc7 IPR002121 HRDC domain 212 292 1.1E-11
Gene3D G3DSA:1.10.150.80 HRDC domain IPR044876 HRDC domain superfamily 197 296 4.7E-27
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 5 212 1.35E-60
SUPERFAMILY SSF47819 HRDC-like IPR010997 HRDC-like superfamily 297 372 1.42E-15
NCBIfam TIGR01388 JCVI: ribonuclease D IPR006292 Ribonuclease D 8 373 0.0
Gene3D G3DSA:1.10.150.80 HRDC domain IPR044876 HRDC domain superfamily 303 374 1.1E-8
PANTHER PTHR47649 RIBONUCLEASE D - - 2 373 0.0
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 5 193 7.1E-61

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.