Pseudomonas aeruginosa UCBPP-PA14, PA14_47760 (cobB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00379
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07685
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0042242 cobyrinic acid a,c-diamide synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00379
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Biosynthesis of cofactors, prosthetic groups and carriers Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52317 IPR029062 Class I glutamine amidotransferase-like 235 428 1.92E-31
Gene3D G3DSA:3.40.50.880 IPR029062 Class I glutamine amidotransferase-like 237 414 7.0E-11
Gene3D G3DSA:3.40.50.300 45 184 1.9E-11
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 8 194 1.77E-40
Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. IPR004484 Cobyrinic acid a,c-diamide synthase CbiA 6 421 39.158
Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain IPR011698 CobB/CobQ-like glutamine amidotransferase 239 418 7.5E-31
Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain 9 187 5.9E-13
ProSiteProfiles PS51274 CobBQ-type GATase domain profile. IPR017929 CobB/CobQ glutamine amidotransferase 239 422 50.133
TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase IPR004484 Cobyrinic acid a,c-diamide synthase CbiA 10 430 4.2E-82
CDD cd05388 CobB_N 7 191 2.42435E-84
CDD cd03130 GATase1_CobB 240 421 2.12006E-73

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.