Pseudomonas aeruginosa UCBPP-PA14, PA14_47910

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF08448 PAS fold IPR013656 PAS fold-4 4 106 8.0E-19
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 184 199 1.3E-7
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 199 215 1.3E-7
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 140 216 2.3E-23
Gene3D G3DSA:1.10.10.60 - - - 118 223 3.0E-30
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 173 219 9.41E-14
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 133 215 8.0E-26
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 4 101 2.79E-11
CDD cd00130 PAS IPR000014 PAS domain 6 106 1.00721E-4
PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED - - 31 217 3.0E-28
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 117 166 6.54E-7
Gene3D G3DSA:3.30.450.20 PAS domain - - 1 112 9.7E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.