Pseudomonas aeruginosa UCBPP-PA14, PA14_49110

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 5 292 1.6E-70
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 4 88 1.2E-21
Gene3D G3DSA:3.40.190.10 - - - 97 288 9.9E-50
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 8 113 1.61E-20
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 9 66 8.7E-18
Gene3D G3DSA:3.40.190.10 - - - 163 261 9.9E-50
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 92 294 6.52E-34
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 92 292 2.8E-32
CDD cd08432 PBP2_GcdR_TrpI_HvrB_AmpR_like - - 94 288 7.94243E-64

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.