Pseudomonas aeruginosa UCBPP-PA14, PA14_49380 (dapE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009089 lysine biosynthetic process via diaminopimelate
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01690
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016787 hydrolase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01546
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009014 succinyl-diaminopimelate desuccinylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01690
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Amino acid biosynthesis and metabolism Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau00300 Lysine biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR43808 ACETYLORNITHINE DEACETYLASE - - 9 381 3.5E-67
Pfam PF01546 Peptidase family M20/M25/M40 IPR002933 Peptidase M20 69 379 2.2E-41
Pfam PF07687 Peptidase dimerisation domain IPR011650 Peptidase M20, dimerisation domain 183 289 1.4E-27
FunFam G3DSA:3.40.630.10:FF:000010 Succinyl-diaminopimelate desuccinylase - - 263 383 2.8E-54
NCBIfam TIGR01246 JCVI: succinyl-diaminopimelate desuccinylase IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria 12 381 0.0
SUPERFAMILY SSF55031 Bacterial exopeptidase dimerisation domain IPR036264 Bacterial exopeptidase dimerisation domain 187 296 4.04E-30
Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria 9 383 51.805077
SUPERFAMILY SSF53187 Zn-dependent exopeptidases - - 9 382 6.29E-65
FunFam G3DSA:3.40.630.10:FF:000005 Succinyl-diaminopimelate desuccinylase - - 9 252 9.7E-129
FunFam G3DSA:3.30.70.360:FF:000011 Succinyl-diaminopimelate desuccinylase - - 187 297 4.2E-35
Gene3D G3DSA:3.40.630.10 Zn peptidases - - 9 253 2.8E-57
CDD cd03891 M20_DapE_proteobac - - 12 378 0.0
Gene3D G3DSA:3.40.630.10 Zn peptidases - - 262 383 9.6E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.