Pseudomonas aeruginosa UCBPP-PA14, PA14_49630

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00866
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF07702 UTRA domain IPR011663 UbiC transcription regulator-associated 92 230 1.0E-37
PANTHER PTHR44846 MANNOSYL-D-GLYCERATE TRANSPORT/METABOLISM SYSTEM REPRESSOR MNGR-RELATED - - 1 235 1.3E-53
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 10 81 8.35E-21
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 31 45 1.1E-9
SUPERFAMILY SSF64288 Chorismate lyase-like IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily 59 235 1.11E-41
Gene3D G3DSA:3.40.1410.10 - IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily 79 237 1.8E-35
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 3 74 1.7E-21
SMART SM00866 UTRA_2 IPR011663 UbiC transcription regulator-associated 92 231 2.2E-30
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 12 72 2.09961E-20
SMART SM00345 gntr3 IPR000524 Transcription regulator HTH, GntR 12 71 5.1E-19
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 12 71 6.4E-19
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 45 61 1.1E-9
FunFam G3DSA:1.10.10.10:FF:000287 Phosphonate utilization transcriptional regulator PhnR - - 6 76 4.6E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.