Pseudomonas aeruginosa UCBPP-PA14, PA14_49640

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 101 291 6.52E-27
Gene3D G3DSA:3.40.190.10 - - - 104 270 6.8E-46
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 50 61 1.5E-6
FunFam G3DSA:3.40.190.10:FF:000069 HTH-type transcriptional regulator lrhA - - 170 263 7.8E-35
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 9 94 4.8E-25
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 29 40 1.5E-6
Gene3D G3DSA:3.40.190.10 - - - 170 263 6.8E-46
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 6 119 1.74E-23
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 101 287 3.7E-27
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 12 95 5.9E-23
PANTHER PTHR30579 TRANSCRIPTIONAL REGULATOR - - 11 294 6.1E-81
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 40 50 1.5E-6
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 14 72 4.7E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.