Pseudomonas aeruginosa UCBPP-PA14, PA14_49790

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 7 90 8.6E-21
Gene3D G3DSA:3.40.190.290 - - - 92 297 1.0E-57
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 9 297 6.8E-78
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 7 88 8.16E-18
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 10 67 7.6E-18
CDD cd08474 PBP2_CrgA_like_5 - - 95 295 1.11909E-106
FunFam G3DSA:3.40.190.290:FF:000001 Transcriptional regulator, LysR family - - 93 298 6.8E-65
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 94 296 4.3E-41
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 2 89 3.8E-20
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 95 297 9.05E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.