Pseudomonas aeruginosa UCBPP-PA14, PA14_49890 (tpbB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other UCBPP-PA14 genes in this class
Motility & Attachment Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 118 427 2.8E-74
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 245 408 6.0E-44
SMART SM00304 HAMP_11 IPR003660 HAMP domain 183 236 9.6E-8
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 244 411 1.3E-41
Gene3D G3DSA:6.10.340.10 - - - 145 241 8.7E-8
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 254 408 1.02E-44
Coils Coil Coil - - 217 244 -
SMART SM00267 duf1_3 IPR000160 GGDEF domain 238 411 3.6E-56
MobiDBLite mobidb-lite consensus disorder prediction - - 413 429 -
Pfam PF17152 Periplasmic sensor domain IPR033417 Periplasmic sensor domain CHASE8 45 145 4.6E-33
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 254 413 4.8E-55
CDD cd01949 GGDEF IPR000160 GGDEF domain 250 406 6.15447E-60
Pfam PF00672 HAMP domain IPR003660 HAMP domain 181 232 5.5E-9
MobiDBLite mobidb-lite consensus disorder prediction - - 413 435 -
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 249 405 1.9E-46
CDD cd06225 HAMP - - 186 231 4.06463E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.