Pseudomonas aeruginosa UCBPP-PA14, PA14_50540 (livM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015658 branched-chain amino acid transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30482
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02653
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other UCBPP-PA14 genes in this class
Transport of small molecules Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06581 TM_PBP1_LivM_like IPR043428 High-affinity branched-chain amino acid transport system permease protein LivM-like 120 407 4.06468E-78
Pfam PF02653 Branched-chain amino acid transport system / permease component IPR001851 ABC transporter, permease 114 398 3.5E-55
Pfam PF11862 Domain of unknown function (DUF3382) IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal 3 105 1.4E-19
PANTHER PTHR30482 HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE IPR043428 High-affinity branched-chain amino acid transport system permease protein LivM-like 88 414 4.7E-112

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.