Pseudomonas aeruginosa UCBPP-PA14, PA14_51800 (ruvC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004520 endodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00228
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 150 6.8E-68
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 61 77 6.2E-41
PANTHER PTHR30194 CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC IPR002176 Crossover junction endodeoxyribonuclease RuvC 2 157 2.0E-60
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 5 18 6.2E-41
FunFam G3DSA:3.30.420.10:FF:000002 Crossover junction endodeoxyribonuclease RuvC - - 2 158 5.4E-63
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 83 99 6.2E-41
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 3 156 1.74E-50
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 2 158 6.3E-52
Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. IPR002176 Crossover junction endodeoxyribonuclease RuvC 2 153 47.810333
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 138 150 6.2E-41
PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature IPR002176 Crossover junction endodeoxyribonuclease RuvC 107 126 6.2E-41
CDD cd16962 RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 153 2.32532E-77
NCBIfam TIGR00228 JCVI: crossover junction endodeoxyribonuclease RuvC IPR002176 Crossover junction endodeoxyribonuclease RuvC 4 155 1.4E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.