Pseudomonas aeruginosa UCBPP-PA14, PA14_52420 (rimO)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0035596 methylthiotransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00919
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00274
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0018339 peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00274
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016740 transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDG01061
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDG01061
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006400 tRNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDG01061
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Putative enzymes Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 139 365 2.6E-51
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 380 440 4.0E-24
Pfam PF18693 TRAM domain IPR002792 TRAM domain 379 440 3.9E-24
Pfam PF00919 Uncharacterized protein family UPF0004 IPR013848 Methylthiotransferase, N-terminal 7 97 1.1E-20
PANTHER PTHR43837 RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 1 440 0.0
FunFam G3DSA:3.40.50.12160:FF:000002 Ribosomal protein S12 methylthiotransferase RimO - - 7 124 1.8E-53
Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 6 439 61.784798
FunFam G3DSA:3.80.30.20:FF:000001 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 2 - - 137 379 3.2E-89
SUPERFAMILY SSF102114 Radical SAM enzymes - - 109 370 3.4E-53
SFLD SFLDG01082 B12-binding domain containing - - 123 364 6.5E-28
Gene3D G3DSA:3.40.50.12160 - IPR038135 Methylthiotransferase, N-terminal domain superfamily 7 125 1.2E-27
NCBIfam TIGR00089 JCVI: MiaB/RimO family radical SAM methylthiotransferase IPR005839 Methylthiotransferase 7 437 2.4E-103
SFLD SFLDG01061 methylthiotransferase IPR005839 Methylthiotransferase 4 439 0.0
CDD cd01335 Radical_SAM - - 143 345 4.8216E-10
Gene3D G3DSA:3.80.30.20 tm_1862 like domain IPR023404 Radical SAM, alpha/beta horseshoe 137 379 1.1E-70
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 145 322 1.0E-25
SFLD SFLDF00274 ribosomal protein S12 methylthiotransferase (RimO-like) IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 4 439 0.0
FunFam G3DSA:2.40.50.140:FF:000060 Ribosomal protein S12 methylthiotransferase RimO - - 380 440 3.0E-29
NCBIfam TIGR01125 JCVI: 30S ribosomal protein S12 methylthiotransferase RimO IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 7 436 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.