Pseudomonas aeruginosa UCBPP-PA14, PA14_52570 (rsmA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006402 mRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34984
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006109 regulation of carbohydrate metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34984
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34984
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class
Transcriptional regulators Other UCBPP-PA14 genes in this class
Adaptation, Protection Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.60.40.4380 Translational regulator CsrA IPR036107 Carbon storage regulator superfamily 1 61 2.3E-27
FunFam G3DSA:2.60.40.4380:FF:000001 Translational regulator CsrA - - 1 60 4.8E-40
SUPERFAMILY SSF117130 CsrA-like IPR036107 Carbon storage regulator superfamily 1 54 5.49E-21
PANTHER PTHR34984 CARBON STORAGE REGULATOR IPR003751 Translational regulator CsrA 1 59 4.1E-25
NCBIfam TIGR00202 JCVI: carbon storage regulator CsrA IPR003751 Translational regulator CsrA 1 57 5.6E-30
Pfam PF02599 Global regulator protein family IPR003751 Translational regulator CsrA 1 53 6.3E-26
Hamap MF_00167 Translational regulator CsrA [csrA]. IPR003751 Translational regulator CsrA 1 60 17.07373

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.