Pseudomonas aeruginosa UCBPP-PA14, PA14_52780 (aotQ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015822 ornithine transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0889
 ECO:0000249
sequence similarity evidence used in automatic assertion		 9791103
Biological Process GO:1902023 L-arginine transport
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0889
 ECO:0000249
sequence similarity evidence used in automatic assertion		 9791103
Biological Process GO:0071705 nitrogen compound transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01726
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other UCBPP-PA14 genes in this class
Membrane proteins Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 27 178 1.08855E-14
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 1 223 1.0E-48
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 28 220 2.4E-22
PANTHER PTHR30133 CATIONIC AMINO ACID TRANSPORTER, MEMBRANE COMPONENT - - 1 228 4.3E-96
NCBIfam TIGR01726 JCVI: ABC transporter permease subunit, His/Glu/Gln/Arg/opine family, N-terminal region IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain 8 115 2.3E-19
FunFam G3DSA:1.10.3720.10:FF:000020 Histidine ABC transporter permease HisQ - - 1 223 6.7E-108
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 9 206 5.76E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.