Pseudomonas aeruginosa UCBPP-PA14, PA14_52980 (phhR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006559 L-phenylalanine catabolic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0873
ECO:0000249
sequence similarity evidence used in automatic assertion
8939433
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04381
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction 499 519 -
SMART SM00382 IPR003593 AAA+ ATPase domain 227 372 1.2E-6
Pfam PF01842 ACT domain IPR002912 ACT domain 3 64 1.9E-8
Pfam PF00989 PAS fold IPR013767 PAS fold 83 140 1.5E-6
SMART SM00091 IPR000014 PAS domain 82 148 9.6E-9
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 207 449 4.9E-61
CDD cd00009 AAA 214 378 6.63266E-20
Gene3D G3DSA:3.30.450.20 84 191 5.2E-23
Gene3D G3DSA:3.30.70.260 1 83 1.3E-24
Gene3D G3DSA:3.40.50.300 193 379 1.9E-57
ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. IPR025662 Sigma-54 interaction domain, ATP-binding site 1 231 244 -
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 208 374 1.7E-58
CDD cd00130 PAS IPR000014 PAS domain 92 149 2.02234E-6
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 459 514 1.48E-7
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 80 138 10.973
Gene3D G3DSA:1.10.10.60 461 516 1.3E-20
ProSiteProfiles PS51671 ACT domain profile. IPR002912 ACT domain 2 74 9.95
ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. IPR025944 Sigma-54 interaction domain, conserved site 421 430 -
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 84 142 3.66E-9
Pfam PF18024 Helix-turn-helix domain IPR030828 TyrR family, helix-turn-helix domain 466 514 6.7E-16
Gene3D G3DSA:1.10.8.60 383 455 1.6E-20
TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain IPR030828 TyrR family, helix-turn-helix domain 469 515 1.7E-21
SUPERFAMILY SSF55021 2 72 2.33E-9
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 207 437 60.003

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.