Pseudomonas aeruginosa UCBPP-PA14, PA14_52980 (phhR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006559 L-phenylalanine catabolic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0873
 ECO:0000249
sequence similarity evidence used in automatic assertion		 8939433
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF18024
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 499 519 -
FunFam G3DSA:1.10.10.60:FF:000112 TyrR family transcriptional regulator - - 459 516 1.7E-28
CDD cd00009 AAA - - 214 378 8.03637E-20
SMART SM00091 pas_2 IPR000014 PAS domain 82 148 9.6E-9
Gene3D G3DSA:3.30.450.20 PAS domain - - 84 191 1.6E-20
Pfam PF18024 Helix-turn-helix domain IPR030828 TyrR family, helix-turn-helix domain 467 514 8.4E-13
CDD cd00130 PAS IPR000014 PAS domain 92 149 2.45035E-6
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 208 374 1.8E-58
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 154 514 2.6E-104
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 207 449 4.9E-61
Pfam PF00989 PAS fold IPR013767 PAS fold 83 140 1.6E-6
Gene3D G3DSA:1.10.10.60 - - - 462 515 1.4E-18
Gene3D G3DSA:3.30.70.260 - - - 1 82 1.9E-24
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 84 142 3.66E-9
Gene3D G3DSA:1.10.8.60 - - - 380 453 1.6E-20
NCBIfam TIGR04381 JCVI: TyrR family helix-turn-helix domain IPR030828 TyrR family, helix-turn-helix domain 469 515 5.9E-21
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 193 379 3.2E-58
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 227 372 1.2E-6
FunFam G3DSA:3.30.450.20:FF:000052 Sigma-54 dependent transcriptional regulator - - 84 191 1.4E-64
Pfam PF01842 ACT domain IPR002912 ACT domain 3 64 3.6E-8
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 459 514 1.48E-7
SUPERFAMILY SSF55021 ACT-like IPR045865 ACT-like domain 2 72 2.33E-9
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 198 378 1.9E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.