Pseudomonas aeruginosa UCBPP-PA14, PA14_53310
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 506 | 677 | 1.3E-63 |
| SUPERFAMILY | SSF158472 | HAMP domain-like | - | - | 341 | 389 | 7.32E-5 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 389 | 513 | 1.2E-22 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 512 | 678 | 4.4E-45 |
| PANTHER | PTHR46663 | DIGUANYLATE CYCLASE DGCT-RELATED | - | - | 3 | 680 | 4.7E-112 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 515 | 673 | 4.7E-42 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 83 | 245 | 3.9E-28 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 517 | 671 | 2.5E-45 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 340 | 392 | 3.2E-7 |
| Coils | Coil | Coil | - | - | 373 | 393 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 522 | 677 | 6.83E-47 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 464 | 506 | 8.1E-5 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 392 | 514 | 6.9E-26 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 401 | 503 | 2.98227E-17 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 392 | 458 | 6.3E-15 |
| Gene3D | G3DSA:6.10.340.10 | - | - | - | 310 | 391 | 1.3E-8 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 515 | 679 | 3.9E-57 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 393 | 503 | 1.0E-15 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 341 | 388 | 8.6E-8 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 379 | 504 | 4.67E-28 |
| CDD | cd06225 | HAMP | - | - | 343 | 387 | 2.99158E-5 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 518 | 675 | 8.55375E-63 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.