Pseudomonas aeruginosa UCBPP-PA14, PA14_53520 (oruR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal 28 211 2.0E-40
Gene3D G3DSA:1.10.10.60 234 339 1.7E-23
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 305 320 1.3E-5
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 261 337 6.3E-19
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 320 336 1.3E-5
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 254 336 3.6E-26
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 289 337 4.18E-13
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 241 338 20.526

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.