Pseudomonas aeruginosa UCBPP-PA14, PA14_54130

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 47 58 4.5E-6
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 9 92 7.3E-31
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 7 298 8.8E-68
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 95 293 1.1E-23
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 87 297 7.42E-31
Gene3D G3DSA:3.40.190.10 - - - 167 266 2.9E-33
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 26 37 4.5E-6
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 9 96 9.3E-23
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 37 47 4.5E-6
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 12 70 1.3E-19
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 6 90 3.49E-21
Gene3D G3DSA:3.40.190.10 - - - 101 292 2.9E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.