Pseudomonas aeruginosa UCBPP-PA14, PA14_54330 (rnc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00535
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004525 ribonuclease III activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00535
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016075 rRNA catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00535 IPR000999 Ribonuclease III domain 20 148 1.8E-59
TIGRFAM TIGR02191 RNaseIII: ribonuclease III IPR011907 Ribonuclease III 8 220 2.4E-69
SUPERFAMILY SSF54768 108 226 5.79E-26
Gene3D G3DSA:1.10.1520.10 IPR036389 Ribonuclease III, endonuclease domain superfamily 1 145 4.1E-45
ProSiteProfiles PS50137 Double stranded RNA-binding domain (dsRBD) profile. IPR014720 Double-stranded RNA-binding domain 154 224 15.995
CDD cd00048 DSRM IPR014720 Double-stranded RNA-binding domain 154 212 3.21369E-13
Pfam PF00035 Double-stranded RNA binding motif IPR014720 Double-stranded RNA-binding domain 155 219 6.2E-8
Pfam PF14622 Ribonuclease-III-like IPR000999 Ribonuclease III domain 18 139 2.8E-35
Gene3D G3DSA:3.30.160.20 153 223 8.5E-16
ProSitePatterns PS00517 Ribonuclease III family signature. IPR000999 Ribonuclease III domain 37 45 -
Hamap MF_00104 Ribonuclease 3 [rnc]. IPR011907 Ribonuclease III 8 219 30.116
SMART SM00358 IPR014720 Double-stranded RNA-binding domain 155 223 7.1E-16
SUPERFAMILY SSF69065 IPR036389 Ribonuclease III, endonuclease domain superfamily 4 158 7.32E-50
CDD cd00593 RIBOc IPR000999 Ribonuclease III domain 20 148 5.22786E-55
ProSiteProfiles PS50142 Ribonuclease III family domain profile. IPR000999 Ribonuclease III domain 5 127 48.744

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.