Pseudomonas aeruginosa UCBPP-PA14, PA14_54330 (rnc)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004525 ribonuclease III activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00535
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00535
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00104
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00035 Double-stranded RNA binding motif IPR014720 Double-stranded RNA-binding domain 155 219 5.5E-8
Gene3D G3DSA:1.10.1520.10 Ribonuclease III domain IPR036389 Ribonuclease III, endonuclease domain superfamily 1 145 1.2E-45
SUPERFAMILY SSF54768 dsRNA-binding domain-like - - 108 226 5.79E-26
PANTHER PTHR14950 DICER-RELATED - - 2 222 2.9E-34
CDD cd00593 RIBOc IPR000999 Ribonuclease III domain 20 148 6.33427E-55
SUPERFAMILY SSF69065 RNase III domain-like IPR036389 Ribonuclease III, endonuclease domain superfamily 4 158 7.32E-50
SMART SM00358 DRBM_3 IPR014720 Double-stranded RNA-binding domain 155 223 7.1E-16
Hamap MF_00104 Ribonuclease 3 [rnc]. IPR011907 Ribonuclease III 8 219 30.116226
FunFam G3DSA:3.30.160.20:FF:000077 Ribonuclease 3 - - 153 223 1.0E-51
FunFam G3DSA:1.10.1520.10:FF:000001 Ribonuclease 3 - - 2 147 2.1E-53
NCBIfam TIGR02191 JCVI: ribonuclease III IPR011907 Ribonuclease III 8 220 8.1E-69
Pfam PF14622 Ribonuclease-III-like IPR000999 Ribonuclease III domain 18 139 1.3E-34
CDD cd10845 DSRM_RNAse_III_family - - 153 212 5.83914E-19
SMART SM00535 riboneu5 IPR000999 Ribonuclease III domain 20 148 1.8E-59
Gene3D G3DSA:3.30.160.20 - - - 153 223 4.0E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.