Pseudomonas aeruginosa UCBPP-PA14, PA14_54430 (algU)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1902201 negative regulation of bacterial-type flagellum-dependent cell motility
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0762
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16291668
Biological Process GO:0032885 regulation of polysaccharide biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0762
 ECO:0000249
sequence similarity evidence used in automatic assertion		 14645293
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02939
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02939
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02939
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02939
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02939
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 122 192 2.2E-23
NCBIfam TIGR02939 JCVI: RNA polymerase sigma factor RpoE IPR014286 RNA polymerase sigma-70 RpoE type 3 190 2.4E-98
PANTHER PTHR43133 RNA POLYMERASE ECF-TYPE SIGMA FACTO IPR039425 RNA polymerase sigma-70 like 3 189 2.8E-47
CDD cd06171 Sigma70_r4 - - 132 182 6.40095E-13
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 25 92 1.1E-17
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 1 108 1.38E-32
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 123 187 7.85E-18
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 132 181 3.1E-18
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 21 186 2.0E-30
FunFam G3DSA:1.10.10.10:FF:000043 RNA polymerase sigma factor - - 122 192 1.0E-39
Gene3D G3DSA:1.10.1740.10 - - - 1 121 4.4E-36
FunFam G3DSA:1.10.1740.10:FF:000001 RNA polymerase sigma factor - - 1 121 1.2E-65

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.