Pseudomonas aeruginosa UCBPP-PA14, PA14_54800

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016866 intramolecular transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00093
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.10.290.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00165 S4 - - 1 66 1.27714E-10
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 1 42 2.6E-8
PANTHER PTHR47683 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED - - 1 227 7.5E-48
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 1 62 1.6E-16
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA-like 62 190 4.2E-13
CDD cd02553 PseudoU_synth_RsuA - - 61 227 9.30391E-92
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 61 227 4.8E-43
NCBIfam TIGR00093 JCVI: pseudouridine synthase IPR000748 Pseudouridine synthase, RsuA/RluB/E/F 66 223 3.6E-40
SMART SM00363 s4_6 IPR002942 RNA-binding S4 domain 1 58 1.2E-6
Gene3D G3DSA:3.30.70.1560 - IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain 128 209 8.6E-51
Gene3D G3DSA:3.30.70.580 - IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal 63 227 8.6E-51
FunFam G3DSA:3.30.70.1560:FF:000001 Pseudouridine synthase - - 128 209 9.9E-22
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 1 90 6.02E-14

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.