Pseudomonas aeruginosa UCBPP-PA14, PA14_60040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF47598
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH IPR022789 Antitoxin ParD 6 62 1.8E-10
Gene3D G3DSA:6.10.10.120 - IPR038296 Antitoxin ParD superfamily 10 88 5.2E-16
NCBIfam TIGR02606 JCVI: type II toxin-antitoxin system ParD family antitoxin IPR022789 Antitoxin ParD 3 67 3.1E-16
SUPERFAMILY SSF47598 Ribbon-helix-helix IPR010985 Ribbon-helix-helix 1 43 2.67E-11
CDD cd22231 RHH_NikR_HicB-like - - 5 45 1.99121E-11
PANTHER PTHR36582 ANTITOXIN PARD IPR022789 Antitoxin ParD 1 66 4.3E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.