Pseudomonas aeruginosa UCBPP-PA14, PA14_60210 (rluD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00849
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class
Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00165 S4 - - 18 95 2.03502E-7
FunFam G3DSA:3.10.290.10:FF:000011 Pseudouridine synthase - - 2 75 1.2E-27
Pfam PF00849 RNA pseudouridylate synthase IPR006145 Pseudouridine synthase, RsuA/RluA-like 91 241 4.4E-32
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 17 104 8.41E-8
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 18 63 4.8E-7
FunFam G3DSA:3.30.2350.10:FF:000006 Pseudouridine synthase - - 84 314 1.5E-105
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 75 314 1.01E-80
NCBIfam TIGR00005 JCVI: RluA family pseudouridine synthase IPR006225 Pseudouridine synthase, RluC/RluD 17 311 4.6E-95
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase - - 83 315 7.9E-75
PANTHER PTHR21600 MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE - - 19 308 2.0E-58
CDD cd02869 PseudoU_synth_RluA_like IPR006145 Pseudouridine synthase, RsuA/RluA-like 92 285 9.70907E-79
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 3 74 2.7E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.