Pseudomonas aeruginosa UCBPP-PA14, PA14_71640

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd05466 PBP2_LTTR_substrate - - 95 263 5.06356E-15
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 89 2.91E-20
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 41 52 9.3E-7
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 5 64 4.2E-18
Gene3D G3DSA:3.40.190.10 - - - 186 264 1.4E-5
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 89 292 6.6E-29
FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator - - 1 86 1.7E-19
PANTHER PTHR30126 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 1 292 8.1E-53
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 20 31 9.3E-7
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 89 294 1.1E-22
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 31 41 9.3E-7
Gene3D G3DSA:3.40.190.10 - - - 83 185 5.5E-6
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 82 1.1E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.