Pseudomonas aeruginosa UCBPP-PA14, PA14_72210

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008452 RNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.1860.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.1860.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Antibiotic resistance and susceptibility Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01139 tRNA-splicing ligase RtcB IPR001233 RNA-splicing ligase, RtcB 29 97 6.4E-9
Pfam PF01139 tRNA-splicing ligase RtcB IPR001233 RNA-splicing ligase, RtcB 125 372 2.4E-56
PANTHER PTHR11118 UNCHARACTERIZED IPR001233 RNA-splicing ligase, RtcB 21 98 2.7E-75
NCBIfam TIGR03073 JCVI: RNA ligase RtcB family protein, release factor H-associated IPR017510 Release factor H-coupled RctB family protein 12 367 0.0
Gene3D G3DSA:3.90.1860.10 - IPR036025 tRNA-splicing ligase RtcB-like superfamily 12 372 2.3E-89
SUPERFAMILY SSF103365 Hypothetical protein PH1602 IPR036025 tRNA-splicing ligase RtcB-like superfamily 8 372 9.94E-104

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.