Pseudomonas aeruginosa UCBPP-PA14, PA14_73020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0070063 RNA polymerase binding
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA5536
ECO:0000249
sequence similarity evidence used in automatic assertion
23416301
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS51128
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other UCBPP-PA14 genes in this class
Transcriptional regulators Other UCBPP-PA14 genes in this class
Two-component regulatory systems Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. IPR012784 RNA polymerase-binding transcription factor DksA 11 132 27.461
TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA IPR012784 RNA polymerase-binding transcription factor DksA 15 123 4.5E-40
Gene3D G3DSA:1.20.120.910 1 134 1.0E-52
ProSiteProfiles PS51128 Prokaryotic dksA C4-type zinc finger profiles. IPR000962 Zinc finger, DksA/TraR C4-type 53 133 29.169
SUPERFAMILY SSF57716 93 131 2.71E-9
Coils Coil 71 91 -
SUPERFAMILY SSF109635 IPR037187 DksA, N-terminal domain superfamily 1 92 3.92E-24
Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger IPR000962 Zinc finger, DksA/TraR C4-type 91 126 4.4E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.