Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003700 | DNA-binding transcription factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0016987 | sigma factor activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0006352 | DNA-templated transcription, initiation |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08281
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
PANTHER | PTHR43133 | RNA POLYMERASE ECF-TYPE SIGMA FACTO | IPR039425 | RNA polymerase sigma-70 like | 14 | 189 | 4.9E-34 |
Gene3D | G3DSA:1.10.10.10 | - | IPR036388 | Winged helix-like DNA-binding domain superfamily | 96 | 183 | 2.1E-17 |
CDD | cd06171 | Sigma70_r4 | - | - | 125 | 179 | 6.45619E-9 |
Gene3D | G3DSA:1.10.1740.10 | - | - | - | 16 | 95 | 8.7E-12 |
SUPERFAMILY | SSF88946 | Sigma2 domain of RNA polymerase sigma factors | IPR013325 | RNA polymerase sigma factor, region 2 | 31 | 107 | 3.49E-14 |
MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 96 | 120 | - |
SUPERFAMILY | SSF88659 | Sigma3 and sigma4 domains of RNA polymerase sigma factors | IPR013324 | RNA polymerase sigma factor, region 3/4-like | 102 | 183 | 6.54E-16 |
NCBIfam | TIGR02937 | JCVI: sigma-70 family RNA polymerase sigma factor | IPR014284 | RNA polymerase sigma-70 like domain | 37 | 179 | 3.0E-24 |
Pfam | PF04542 | Sigma-70 region 2 | IPR007627 | RNA polymerase sigma-70 region 2 | 35 | 95 | 7.8E-15 |
Pfam | PF08281 | Sigma-70, region 4 | IPR013249 | RNA polymerase sigma factor 70, region 4 type 2 | 127 | 178 | 7.5E-16 |