Pseudomonas brassicacearum subsp. brassicacearum NFM421, PSEBR_a5553

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pba03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.1330.60 IPR036737 OmpA-like domain superfamily 282 436 3.2E-54
TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain IPR017733 Type VI secretion system peptidoglycan-associated domain 294 430 3.5E-52
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 326 430 6.75197E-35
Gene3D G3DSA:1.25.40.590 IPR038522 Type IV / VI secretion system, DotU superfamily 51 208 2.4E-53
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 326 424 1.4E-15
TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family IPR017732 Type IV / VI secretion system, DotU 53 262 2.1E-74
MobiDBLite mobidb-lite consensus disorder prediction 25 39 -
Pfam PF09850 Type VI secretion system protein DotU IPR017732 Type IV / VI secretion system, DotU 54 256 3.0E-69
ProSiteProfiles PS51123 OmpA-like domain profile. IPR006665 OmpA-like domain 314 434 46.293
SUPERFAMILY SSF103088 IPR036737 OmpA-like domain superfamily 315 430 2.49E-29
MobiDBLite mobidb-lite consensus disorder prediction 397 420 -
MobiDBLite mobidb-lite consensus disorder prediction 1 41 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.