Pseudomonas sp. UW4, PputUW4_03387 (rplT)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuu03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.1900.20:FF:000001 50S ribosomal protein L20 - - 56 118 1.7E-30
Gene3D G3DSA:6.10.160.10 - - - 3 55 2.4E-26
PRINTS PR00062 Ribosomal protein L20 signature IPR005813 Large ribosomal subunit protein bL20 42 71 2.2E-41
NCBIfam TIGR01032 JCVI: 50S ribosomal protein L20 IPR005813 Large ribosomal subunit protein bL20 1 114 3.7E-51
PRINTS PR00062 Ribosomal protein L20 signature IPR005813 Large ribosomal subunit protein bL20 12 41 2.2E-41
CDD cd07026 Ribosomal_L20 IPR005813 Large ribosomal subunit protein bL20 6 111 3.45419E-52
SUPERFAMILY SSF74731 Ribosomal protein L20 IPR035566 Ribosomal protein bL20, C-terminal 3 116 3.79E-50
Gene3D G3DSA:1.10.1900.20 Ribosomal protein L20 IPR035566 Ribosomal protein bL20, C-terminal 56 118 2.6E-28
Hamap MF_00382 50S ribosomal protein L20 [rplT]. IPR005813 Large ribosomal subunit protein bL20 2 115 31.125669
PANTHER PTHR10986 39S RIBOSOMAL PROTEIN L20 IPR005813 Large ribosomal subunit protein bL20 1 116 1.6E-40
Pfam PF00453 Ribosomal protein L20 IPR005813 Large ribosomal subunit protein bL20 3 109 1.3E-48
PRINTS PR00062 Ribosomal protein L20 signature IPR005813 Large ribosomal subunit protein bL20 75 101 2.2E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.