Pseudomonas aeruginosa UCBPP-PA14, PA14_08790 (rpsL)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_08790
Name
rpsL
Replicon chromosome
Genomic location 754693 - 755064 (+ strand)
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq YP_788851.1
GI 116052303
Entrez 4381343
INSDC ABJ13539.1
NCBI Locus Tag PA14_08790
UniParc UPI0000134C69
UniProtKB Acc Q02T85
UniProtKB ID RS12_PSEAB
UniRef100 UniRef100_A6UZI3
UniRef50 UniRef50_P61941
UniRef90 UniRef90_A6W397

Product

Feature Type CDS
Coding Frame 1
Product Name
30S ribosomal protein S12
Synonyms
Evidence for Translation
Charge (pH 7) 20.61
Kyte-Doolittle Hydrophobicity Value -0.818
Molecular Weight (kDa) 13.8
Isoelectric Point (pI) 11.60

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7UNR RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.9 ELECTRON MICROSCOPY 100.0
7UNW RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.6 ELECTRON MICROSCOPY 100.0
6SPC RIBOSOME 09/01/19 Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate Pseudomonas aeruginosa 2.95 ELECTRON MICROSCOPY 100.0
7UNV RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.7 ELECTRON MICROSCOPY 100.0
7UNU RIBOSOME 04/11/22 Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.9 ELECTRON MICROSCOPY 100.0
6SPF RIBOSOME 09/01/19 Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate Pseudomonas aeruginosa 2.89 ELECTRON MICROSCOPY 100.0
6SPE RIBOSOME 09/01/19 Pseudomonas aeruginosa 30s ribosome from a clinical isolate Pseudomonas aeruginosa 3.6 ELECTRON MICROSCOPY 100.0
6SPG RIBOSOME 09/01/19 Pseudomonas aeruginosa 70s ribosome from a clinical isolate Pseudomonas aeruginosa 3.34 ELECTRON MICROSCOPY 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 660 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001443 (531 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_08790
Search term: rpsL

Human Homologs

Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5
Ensembl 110, assembly GRCh38.p14
mitochondrial ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10380]
E-value: 9.5e-21
Percent Identity: 49.5

References

No references are associated with this feature.