Strain |
Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest |
Locus Tag |
PA14_08840
|
Name |
rpsJ
|
Replicon | chromosome |
Genomic location | 759165 - 759476 (+ strand) |
RefSeq | YP_788855.1 |
GI | 116052299 |
Entrez | 4381339 |
INSDC | ABJ13535.1 |
NCBI Locus Tag | PA14_08840 |
UniParc | UPI0000134BBD |
UniProtKB Acc | Q02T81 |
UniProtKB ID | RS10_PSEAB |
UniRef100 | UniRef100_A6UZI7 |
UniRef50 | UniRef50_P19460 |
UniRef90 | UniRef90_B4RZN1 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S10
|
Synonyms | |
Evidence for Translation | |
Charge (pH 7) | 4.71 |
Kyte-Doolittle Hydrophobicity Value | -0.488 |
Molecular Weight (kDa) | 11.8 |
Isoelectric Point (pI) | 10.47 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7NAX | RIBOSOME | 01/25/21 | Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement) | Escherichia coli | 2.96 | ELECTRON MICROSCOPY | 90.3 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
7NAV | RIBOSOME | 01/25/21 | Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement) | Escherichia coli (strain K12) | 4.8 | ELECTRON MICROSCOPY | 90.3 |
7O1C | TRANSLATION | 03/29/21 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan | Escherichia coli (strain K12); Escherichia coli K-12; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 90.3 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
6SPC | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.95 | ELECTRON MICROSCOPY | 100.0 |
7OE0 | RIBOSOME | 04/30/21 | E. coli pre-30S delta rbfA ribosomal subunit class F | Escherichia coli BW25113 | 2.69 | ELECTRON MICROSCOPY | 90.3 |
7NWT | RIBOSOME | 03/17/21 | Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV) | Escherichia coli; Mengo encephalomyocarditis virus; SYNTHETIC CONSTRUCT | 2.66 | ELECTRON MICROSCOPY | 90.3 |
7N1P | RIBOSOME | 05/28/21 | Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation | Escherichia coli (strain K12); Escherichia coli K-12; SYNTHETIC CONSTRUCT | 2.33 | ELECTRON MICROSCOPY | 90.3 |
4V5B | RIBOSOME | 11/22/07 | Structure of PDF binding helix in complex with the ribosome. | ESCHERICHIA COLI; SYNTHETIC CONSTRUCT | 3.74 | X-RAY DIFFRACTION | 90.3 |
4V57 | RIBOSOME | 07/21/07 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. | Escherichia coli | 3.5 | X-RAY DIFFRACTION | 90.3 |
7O19 | TRANSLATION | 03/29/21 | Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan | Escherichia coli K-12; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 90.3 |
4WOI | RIBOSOME | 10/15/14 | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | Escherichia coli; Escherichia coli str. K-12 substr. MDS42; Thermus thermophilus; SYNTHETIC CONSTRUCT | 3 | X-RAY DIFFRACTION | 90.3 |
4V56 | RIBOSOME | 07/21/07 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin. | Escherichia coli | 3.93 | X-RAY DIFFRACTION | 90.3 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 100.0 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
7OE1 | RIBOSOME | 04/30/21 | 30S ribosomal subunit from E. coli | Escherichia coli (strain K12); Escherichia coli str. K-12 substr. MG1655 | 3.05 | ELECTRON MICROSCOPY | 90.3 |
4V55 | RIBOSOME | 06/17/07 | Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF). | Escherichia coli; Thermus thermophilus | 4 | X-RAY DIFFRACTION | 90.3 |
7O1A | TRANSLATION | 03/29/21 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | Escherichia coli (strain K12); Escherichia coli K-12; SYNTHETIC CONSTRUCT | 2.4 | ELECTRON MICROSCOPY | 90.3 |
4V6C | RIBOSOME | 06/27/09 | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | Escherichia coli; Escherichia coli K-12 | 3.19 | X-RAY DIFFRACTION | 90.3 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 100.0 |
Identified by Diamond using e-value cutoff of 0.0001 and returning alignments that span 100% of the query sequence and that have more than 95% identity.
Drug Name | Source Accession | Source DB | Version | Target Accession | Target Description | Percent Identity | Alignment Length | E-Value |
Nitrofurantoin | DB00698 | DrugBank | 5.1.4 | P0A7R5 | 30S ribosomal protein S10 | 90.3 | 103 | 2.8e-45 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 664 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001446 (528 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA14_08840
Search term: rpsJ
Search term: 30S ribosomal protein S10
|