Pseudomonas aeruginosa UCBPP-PA14, PA14_16950 (dapD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_16950
Name
dapD
Replicon chromosome
Genomic location 1452241 - 1453275 (- strand)

Cross-References

RefSeq YP_789498.1
GI 116051663
Entrez 4383357
INSDC ABJ12899.1
NCBI Locus Tag PA14_16950
UniParc UPI000039613D
UniProtKB Acc Q02RD8
UniProtKB ID Q02RD8_PSEAB
UniRef100 UniRef100_W0YWY0
UniRef50 UniRef50_W0YWY0
UniRef90 UniRef90_W0YWY0

Product

Feature Type CDS
Coding Frame 1
Product Name
tetrahydrodipicolinate succinylase
Synonyms
Evidence for Translation
Charge (pH 7) -3.65
Kyte-Doolittle Hydrophobicity Value 0.198
Molecular Weight (kDa) 36.0
Isoelectric Point (pI) 5.97

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3R5D TRANSFERASE 03/18/11 Pseudomonas aeruginosa DapD (PA3666) apoprotein Pseudomonas aeruginosa 1.8 X-RAY DIFFRACTION 99.7
3R5B TRANSFERASE/TRANSFERASE SUBSTRATE 03/18/11 Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate Pseudomonas aeruginosa 2.51 X-RAY DIFFRACTION 99.7
3R5A TRANSFERASE/TRANSFERASE INHIBITOR 03/18/11 Pseudomonas aeruginosa DapD (PA3666) in complex with D-2-aminopimelate Pseudomonas aeruginosa 1.89 X-RAY DIFFRACTION 99.7
3R5C TRANSFERASE 03/18/11 Pseudomonas aeruginosa DapD (PA3666) in complex with CoA and succinate Pseudomonas aeruginosa 2.4 X-RAY DIFFRACTION 99.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 95 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002008 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_16950
Search term: dapD

Human Homologs

References

No references are associated with this feature.