Pseudomonas aeruginosa UCBPP-PA14, PA14_60190 (clpB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_60190
Name
clpB
Replicon chromosome
Genomic location 5359875 - 5362439 (- strand)
Transposon Mutants 2 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs 13 transposon mutants in orthologs

Cross-References

RefSeq YP_793003.1
GI 116052687
Entrez 4384539
INSDC ABJ13923.1
NCBI Locus Tag PA14_60190
UniParc UPI00000C5D5D
UniProtKB Acc Q02GD3
UniProtKB ID Q02GD3_PSEAB
UniRef100 UniRef100_Q9HVN5
UniRef50 UniRef50_P63284-2
UniRef90 UniRef90_Q9HVN5

Product

Feature Type CDS
Coding Frame 1
Product Name
clpB protein
Synonyms
Evidence for Translation
Charge (pH 7) -20.58
Kyte-Doolittle Hydrophobicity Value -0.346
Molecular Weight (kDa) 95.0
Isoelectric Point (pI) 5.13

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 598 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000451 (857 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_60190
Search term: clpB
Search term: clpB protein

Human Homologs

Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 3.8e-52
Percent Identity: 36.4
Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 3.8e-52
Percent Identity: 36.4
Ensembl 110, assembly GRCh38.p14
caseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]
E-value: 3.8e-52
Percent Identity: 36.4

References

No references are associated with this feature.