Pseudomonas aeruginosa UCBPP-PA14, PA14_68660 (rimK)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006)
GCF_000014625.1|latest
Locus Tag
PA14_68660
Name
rimK
Replicon chromosome
Genomic location 6121353 - 6122258 (+ strand)
Transposon Mutants 2 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs 4 transposon mutants in orthologs

Cross-References

RefSeq YP_793669.1
GI 116053345
Entrez 4384380
INSDC ABJ14581.1
NCBI Locus Tag PA14_68660
UniParc UPI00000C5F4B
UniProtKB Acc Q02EG7
UniProtKB ID RIMK_PSEAB
UniRef100 UniRef100_A6VDX3
UniRef50 UniRef50_B2TUM8
UniRef90 UniRef90_A6VDX3

Product

Feature Type CDS
Coding Frame 1
Product Name
ribosomal protein S6 modification protein
Synonyms
Evidence for Translation
Charge (pH 7) 8.83
Kyte-Doolittle Hydrophobicity Value -0.020
Molecular Weight (kDa) 32.6
Isoelectric Point (pI) 9.77

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7QYR LIGASE 01/29/22 Crystal structure of RimK from Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.4 X-RAY DIFFRACTION 100.0
7QYS LIGASE 01/29/22 Crystal structure of RimK from Pseudomonas syringae DC3000 Pseudomonas syringae pv. tomato str. DC3000 2.9 X-RAY DIFFRACTION 92.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 370 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004781 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_68660
Search term: rimK

Human Homologs

References

No references are associated with this feature.