Pseudomonas aeruginosa PAO1, PA3588

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3588
Name
Synonym: opdR
Replicon chromosome
Genomic location 4020669 - 4021919 (- strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_252278.1
GI 15598784
Affymetrix PA3588_at
DNASU PaCD00007574
Entrez 880221
GenBank AAG06976.1
INSDC AAG06976.1
NCBI Locus Tag PA3588
protein_id(GenBank) gb|AAG06976.1|AE004779_8|gnl|PseudoCAP|PA3588
TIGR NTL03PA03588
UniParc UPI00000C5A7B
UniProtKB Acc Q9HY38
UniProtKB ID Q9HY38_PSEAE
UniRef100 UniRef100_S0J8K0
UniRef50 UniRef50_G8PYD8
UniRef90 UniRef90_S0J8K0

Product

Feature Type CDS
Coding Frame 1
Product Name
probable porin
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Charge (pH 7) 0.91
Kyte-Doolittle Hydrophobicity Value -0.378
Molecular Weight (kDa) 45.7
Isoelectric Point (pI) 7.55

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 2
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4FSP TRANSPORT PROTEIN 06/27/12 Crystal Structure of Pseudomonas aeruginosa OccK11 (OpdR) Pseudomonas aeruginosa 2.323 X-RAY DIFFRACTION 99.7

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 16 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002082 (299 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3588
Search term: probable porin

Human Homologs

References

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
Cloning and nucleotide sequence of anaerobically induced porin protein E1 (OprE) of Pseudomonas aeruginosa PAO1.
Yamano Y, Nishikawa T, Komatsu Y
Mol Microbiol 1993 May;8(5):993-1004
PubMed ID: 8394980