Pseudomonas aeruginosa PAO1, PA3961

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3961
Name
Synonym: hrpB
Replicon chromosome
Genomic location 4439795 - 4442311 (- strand)
Transposon Mutants 3 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_252650.1
GI 15599156
Affymetrix PA3961_at
Entrez 878875
GenBank AAG07348.1
INSDC AAG07348.1
NCBI Locus Tag PA3961
protein_id(GenBank) gb|AAG07348.1|AE004814_3|gnl|PseudoCAP|PA3961
TIGR NTL03PA03961
UniParc UPI00000C5B9D
UniProtKB Acc Q9HX55
UniProtKB ID Q9HX55_PSEAE
UniRef100 UniRef100_Q9HX55
UniRef50 UniRef50_D2UGH8
UniRef90 UniRef90_A6V0E9

Product

Feature Type CDS
Coding Frame 1
Product Name
probable ATP-dependent helicase
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 2.32
Kyte-Doolittle Hydrophobicity Value -0.204
Molecular Weight (kDa) 91.8
Isoelectric Point (pI) 7.46

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 314 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001718 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3961

Human Homologs

Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.7e-57
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.7e-57
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.7e-57
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.7e-57
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.7e-57
Percent Identity: 34.7
Ensembl 110, assembly GRCh38.p14
DEAH-box helicase 16 [Source:HGNC Symbol;Acc:HGNC:2739]
E-value: 1.7e-57
Percent Identity: 34.7

References

No references are associated with this feature.