Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4366
|
Name |
sodB
|
Replicon | chromosome |
Genomic location | 4893697 - 4894278 (+ strand) |
RefSeq | NP_253056.1 |
GI | 15599562 |
Affymetrix | PA4366_sodB_at |
Entrez | 881397 |
GenBank | AAG07754.1 |
INSDC | AAG07754.1 |
NCBI Locus Tag | PA4366 |
protein_id(GenBank) | gb|AAG07754.1|AE004852_7|gnl|PseudoCAP|PA4366 |
TIGR | NTL03PA04367 |
UniParc | UPI0000165ED5 |
UniProtKB Acc | P53641 |
UniProtKB ID | SODF_PSEAE |
UniRef100 | UniRef100_P53641 |
UniRef50 | UniRef50_P09223 |
UniRef90 | UniRef90_P09223 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
superoxide dismutase
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected by MALDI-TOF/TOF (PMID:19333994).
Detected by two-dimensional gel electrophoresis and mass spectral analysis(PMID:21863142).
|
Charge (pH 7) | -6.39 |
Kyte-Doolittle Hydrophobicity Value | -0.288 |
Molecular Weight (kDa) | 21.4 |
Isoelectric Point (pI) | 5.21 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
3SDP | OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR) | 05/06/91 | THE 2.1 ANGSTROMS RESOLUTION STRUCTURE OF IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS | Pseudomonas putida | 2.1 | X-RAY DIFFRACTION | 91.5 |
1DT0 | OXIDOREDUCTASE | 01/10/00 | CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS | Pseudomonas putida | 2.1 | X-RAY DIFFRACTION | 92.1 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 530 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG003959 (531 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4366
Search term: sodB
Search term: superoxide dismutase
|
Ensembl
110, assembly
GRCh38.p14
|
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value:
3.3e-44
Percent Identity:
47.0
|
Ensembl
110, assembly
GRCh38.p14
|
superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]
E-value:
3.3e-44
Percent Identity:
47.0
|
Proteome analysis reveals adaptation of Pseudomonas aeruginosa to the cystic fibrosis lung environment.
Sriramulu DD, Nimtz M, Romling U
Proteomics 2005 Sep;5(14):3712-21
PubMed ID: 16097035
|
Cloning and characterization of the Pseudomonas aeruginosa sodA and sodB genes encoding manganese- and iron-cofactored superoxide dismutase: demonstration of increased manganese superoxide dismutase activity in alginate-producing bacteria.
Hassett DJ, Woodruff WA, Wozniak DJ, Vasil ML, Cohen MS, Ohman DE
J Bacteriol 1993 Dec;175(23):7658-65
PubMed ID: 8244935
|
Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile opportunistic pathogen.
Imperi F, Ciccosanti F, Perdomo AB, Tiburzi F, Mancone C, Alonzi T, Ascenzi P, Piacentini M, Visca P, Fimia GM
Proteomics 2009 Apr;9(7):1901-15
PubMed ID: 19333994
|
Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient.
Rao J, Damron FH, Basler M, Digiandomenico A, Sherman NE, Fox JW, Mekalanos JJ, Goldberg JB
Front Microbiol 2011;2:162
PubMed ID: 21863142
|