Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4563
|
Name |
rpsT
|
Replicon | chromosome |
Genomic location | 5112663 - 5112938 (+ strand) |
RefSeq | NP_253253.1 |
GI | 15599759 |
Affymetrix | PA4563_rpsT_at |
DNASU | PaCD00007976 |
Entrez | 879605 |
GenBank | AAG07951.1 |
INSDC | AAG07951.1 |
NCBI Locus Tag | PA4563 |
protein_id(GenBank) | gb|AAG07951.1|AE004870_2|gnl|PseudoCAP|PA4563 |
TIGR | NTL03PA04564 |
UniParc | UPI0000134E51 |
UniProtKB Acc | Q9HVM1 |
UniProtKB ID | RS20_PSEAE |
UniRef100 | UniRef100_B7V0A6 |
UniRef50 | UniRef50_Q2KZD7 |
UniRef90 | UniRef90_B7V0A6 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
30S ribosomal protein S20
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 15.94 |
Kyte-Doolittle Hydrophobicity Value | -0.516 |
Molecular Weight (kDa) | 9.9 |
Isoelectric Point (pI) | 11.77 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 100.0 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
6SPC | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.95 | ELECTRON MICROSCOPY | 100.0 |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPE | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 30s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.6 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 549 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004222 (535 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4563
Search term: rpsT
Search term: 30S ribosomal protein S20
|
Primary structure of protein S20 from the small ribosomal subunit of Escherichia coli.
Wittmann-Liebold B, Marzinzig E, Lehmann A
FEBS Lett 1976 Sep 15;68(1):110-4
PubMed ID: 786731
|
Structure of the DNA distal to the gene for ribosomal protein S20 in Escherichia coli K12: presence of a strong terminator and an IS1 element.
Mackie GA
Nucleic Acids Res 1986 Sep 11;14(17):6965-81
PubMed ID: 2429258
|
Ribosome activity and modification of 16S RNA are influenced by deletion of ribosomal protein S20.
Rydén-Aulin M, Shaoping Z, Kylsten P, Isaksson LA
Mol Microbiol 1993 Mar;7(6):983-92
PubMed ID: 7683367
|
Relationship of the expression of the S20 and L34 ribosomal proteins to polyamine biosynthesis in Escherichia coli.
Panagiotidis CA, Huang SC, Canellakis ES
Int J Biochem Cell Biol 1995 Feb;27(2):157-68
PubMed ID: 7539334
|