Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA4937
|
Name |
rnr
Synonym: vacB |
Replicon | chromosome |
Genomic location | 5538696 - 5541410 (- strand) |
Transposon Mutants | 4 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 1 transposon mutants in orthologs |
RefSeq | NP_253624.1 |
GI | 15600130 |
Affymetrix | PA4937_rnr_at |
Entrez | 879988 |
GenBank | AAG08322.1 |
INSDC | AAG08322.1 |
NCBI Locus Tag | PA4937 |
protein_id(GenBank) | gb|AAG08322.1|AE004906_10|gnl|PseudoCAP|PA4937 |
TIGR | NTL03PA04938 |
UniParc | UPI00000C5E86 |
UniProtKB Acc | Q9HUM7 |
UniProtKB ID | Q9HUM7_PSEAE |
UniRef100 | UniRef100_Q9HUM7 |
UniRef50 | UniRef50_Q4KJ64 |
UniRef90 | UniRef90_Q9HUM7 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
exoribonuclease RNase R
|
Synonyms |
virulence protein VacB |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 18.14 |
Kyte-Doolittle Hydrophobicity Value | -0.478 |
Molecular Weight (kDa) | 100.1 |
Isoelectric Point (pI) | 9.37 |
Individual Mappings | |
Additional evidence for subcellular localization |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 540 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004552 (534 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA4937
Search term: rnr
Search term: exoribonuclease RNase R
|
Ensembl
110, assembly
GRCh38.p14
|
DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]
E-value:
6.1e-48
Percent Identity:
32.2
|
Ensembl
110, assembly
GRCh38.p14
|
DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]
E-value:
6.1e-48
Percent Identity:
32.2
|
Ensembl
110, assembly
GRCh38.p14
|
DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]
E-value:
6.1e-48
Percent Identity:
32.2
|
vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri.
Tobe T, Sasakawa C, Okada N, Honma Y, Yoshikawa M
J Bacteriol 1992 Oct;174(20):6359-67
PubMed ID: 1400189
|
The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R.
Cheng ZF, Zuo Y, Li Z, Rudd KE, Deutscher MP
J Biol Chem 1998 Jun 5;273(23):14077-80
PubMed ID: 9603904
|