Pseudomonas aeruginosa PAO1, PA5029

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA5029
Name
Synonym: ynfL
Replicon chromosome
Genomic location 5659276 - 5660181 (- strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 3 transposon mutants in orthologs

Cross-References

RefSeq NP_253716.1
GI 15600222
Affymetrix PA5029_at
DNASU PaCD00008166
Entrez 881176
GenBank AAG08414.1
INSDC AAG08414.1
NCBI Locus Tag PA5029
protein_id(GenBank) gb|AAG08414.1|AE004916_3|gnl|PseudoCAP|PA5029
TIGR NTL03PA05030
UniParc UPI00000C5ED4
UniProtKB Acc Q9HUE0
UniProtKB ID Q9HUE0_PSEAE
UniRef100 UniRef100_W0YZC5
UniRef50 UniRef50_P77559
UniRef90 UniRef90_W0YZC5

Product

Feature Type CDS
Coding Frame 1
Product Name
probable transcriptional regulator
Product Name Confidence: Class 3
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) -1.31
Kyte-Doolittle Hydrophobicity Value 0.042
Molecular Weight (kDa) 33.2
Isoelectric Point (pI) 6.65

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 2
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 548 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003437 (1043 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5029

Human Homologs

References

No references are associated with this feature.