Pseudomonas aeruginosa PAO1, PA5197 (rimK)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA5197
Name
rimK
Replicon chromosome
Genomic location 5849143 - 5850048 (+ strand)
Transposon Mutants 4 transposon mutants in PAO1
Transposon Mutants in orthologs 2 transposon mutants in orthologs

Cross-References

RefSeq NP_253884.1
GI 15600390
Affymetrix PA5197_rimK_at
Entrez 880288
GenBank AAG08582.1
INSDC AAG08582.1
NCBI Locus Tag PA5197
protein_id(GenBank) gb|AAG08582.1|AE004932_9|gnl|PseudoCAP|PA5197
TIGR NTL03PA05198
UniParc UPI00000C5F4B
UniProtKB Acc Q9HTZ2
UniProtKB ID RIMK_PSEAE
UniRef100 UniRef100_A6VDX3
UniRef50 UniRef50_B2TUM8
UniRef90 UniRef90_A6VDX3

Product

Feature Type CDS
Coding Frame 1
Product Name
ribosomal protein S6 modification protein
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 8.83
Kyte-Doolittle Hydrophobicity Value -0.020
Molecular Weight (kDa) 32.6
Isoelectric Point (pI) 9.77

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7QYS LIGASE 01/29/22 Crystal structure of RimK from Pseudomonas syringae DC3000 Pseudomonas syringae pv. tomato str. DC3000 2.9 X-RAY DIFFRACTION 92.0
7QYR LIGASE 01/29/22 Crystal structure of RimK from Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.4 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 370 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004781 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5197
Search term: rimK

Human Homologs

References

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.
Oshima T, Aiba H, Baba T, Fujita K, Hayashi K, Honjo A, Ikemoto K, Inada T, Itoh T, Kajihara M, Kanai K, Kashimoto K, Kimura S, Kitagawa M, Makino K, Masuda S, Miki T, Mizobuchi K, Mori H, Motomura K, Nakamura Y, Nashimoto H, Nishio Y, Saito N, Horiuchi T
DNA Res 1996 Jun 30;3(3):137-55
PubMed ID: 8905232