Pseudomonas aeruginosa PAO1, PA5290

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA5290
Name
Synonym: yifB
Replicon chromosome
Genomic location 5953562 - 5955055 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 2 transposon mutants in orthologs

Cross-References

RefSeq NP_253977.1
GI 15600483
Affymetrix PA5290_at
Entrez 878344
GenBank AAG08675.1
INSDC AAG08675.1
NCBI Locus Tag PA5290
protein_id(GenBank) gb|AAG08675.1|AE004941_8|gnl|PseudoCAP|PA5290
TIGR NTL03PA05291
UniParc UPI00000C5F8D
UniProtKB Acc Q9HTR4
UniProtKB ID Q9HTR4_PSEAE
UniRef100 UniRef100_Q9HTR4
UniRef50 UniRef50_U2EP40
UniRef90 UniRef90_V6APJ9

Product

Feature Type CDS
Coding Frame 1
Product Name
conserved hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Charge (pH 7) 5.87
Kyte-Doolittle Hydrophobicity Value -0.035
Molecular Weight (kDa) 53.1
Isoelectric Point (pI) 8.07

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 537 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004867 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5290

Human Homologs

References

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM
Science 1995 Jul 28;269(5223):496-512
PubMed ID: 7542800