Pseudomonas aeruginosa PAO1, PA5310

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA5310
Name
Synonym: ymdC
Replicon chromosome
Genomic location 5979194 - 5980783 (+ strand)
Transposon Mutants 4 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_253997.1
GI 15600503
Affymetrix PA5310_at
Entrez 877641
GenBank AAG08695.1
INSDC AAG08695.1
NCBI Locus Tag PA5310
protein_id(GenBank) gb|AAG08695.1|AE004943_11|gnl|PseudoCAP|PA5310
TIGR NTL03PA05311
UniParc UPI00000C5F9D
UniProtKB Acc Q9HTP4
UniProtKB ID Q9HTP4_PSEAE
UniRef100 UniRef100_Q9HTP4
UniRef50 UniRef50_Q4K3T1
UniRef90 UniRef90_Q9HTP4

Product

Feature Type CDS
Coding Frame 1
Product Name
conserved hypothetical protein
Product Name Confidence: Class 4
Synonyms
Evidence for Translation
Charge (pH 7) 11.83
Kyte-Doolittle Hydrophobicity Value -0.235
Molecular Weight (kDa) 59.2
Isoelectric Point (pI) 9.76

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 260 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004882 (530 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA5310

Human Homologs

References

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295